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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe1G115900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 240aa MW: 27760 Da PI: 7.5628 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.8 | 1.8e-18 | 74 | 127 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++ ++t+eq++ Le+ F+++ ++ e++ +LA++l+L+ rq+ vWFqNrRa++k Aqcoe1G115900.1.p 74 RKKRLTNEQIDSLEKSFQEEIKLEPERKMKLAQELELQPRQIAVWFQNRRARWK 127 56679************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 118.3 | 4.3e-38 | 73 | 164 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 e+k+rl++eq+ +LE+sF+ee kLeperK++la+eL+lqprq+avWFqnrRAR+k kq+E+ y++Lk+++d + +en++L++ev +L+++l+ Aqcoe1G115900.1.p 73 ERKKRLTNEQIDSLEKSFQEEIKLEPERKMKLAQELELQPRQIAVWFQNRRARWKVKQMERLYDTLKKEFDVIIRENQKLQAEVINLKAKLE 164 69**************************************************************************************9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.99E-18 | 63 | 130 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.459 | 69 | 129 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.32E-14 | 72 | 130 | No hit | No description |
SMART | SM00389 | 1.3E-15 | 72 | 133 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 7.9E-16 | 74 | 127 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 7.2E-19 | 76 | 136 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 104 | 127 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 1.4E-8 | 129 | 163 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0010434 | Biological Process | bract formation | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MDWTPGGNFR SFDDHILNNI YNNDFNPFDQ EMEVNSTRYG MQVSIDQTPR SIASSSNNNI 60 TKNKKDFHCN YKERKKRLTN EQIDSLEKSF QEEIKLEPER KMKLAQELEL QPRQIAVWFQ 120 NRRARWKVKQ MERLYDTLKK EFDVIIRENQ KLQAEVINLK AKLEDRASAK QGSTGYTEAS 180 TAEESVESKS VVVFHSSNNR QATNYQHINV AASAAECNYL FNMDAYNPTS SPYLGALPI* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 121 | 129 | RRARWKVKQ |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00486 | DAP | Transfer from AT5G03790 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012082539.1 | 1e-69 | PREDICTED: putative homeobox-leucine zipper protein ATHB-51 | ||||
TrEMBL | A0A067JZ67 | 1e-69 | A0A067JZ67_JATCU; Uncharacterized protein | ||||
STRING | VIT_08s0007g04200.t01 | 2e-65 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03790.1 | 5e-38 | homeobox 51 |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe1G115900.1.p |